Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Mcoln3-201ENSMUST00000039450 2991 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Traf1P39428 Olfr780-202ENSMUST00000215503 2910 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
Traf1P39428 Zfp426-203ENSMUST00000163348 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Zfp60-201ENSMUST00000042641 2727 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 AC160029.1-201ENSMUST00000219628 2678 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Baz2b-202ENSMUST00000112550 7895 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Als2cr12-203ENSMUST00000188772 1382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Olfr907-203ENSMUST00000214264 1910 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Slmap-201ENSMUST00000038522 4501 ntAPPRIS P3 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Slc9a4-201ENSMUST00000027233 3962 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Ryr3-201ENSMUST00000080673 15422 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 n-R5s16-201ENSMUST00000104555 119 ntBASIC6.86□□□□□ -1.31
Traf1P39428 S100a9-202ENSMUST00000117167 519 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Fundc1-203ENSMUST00000142638 597 ntTSL 3 BASIC6.86□□□□□ -1.31
Traf1P39428 Gm22492-201ENSMUST00000157192 297 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Gm26167-201ENSMUST00000158423 253 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Gm16161-201ENSMUST00000162239 290 ntTSL 2 BASIC6.86□□□□□ -1.31
Traf1P39428 Mir3572-201ENSMUST00000175549 86 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Pkib-211ENSMUST00000177473 525 ntAPPRIS P1 TSL 3 BASIC6.86□□□□□ -1.31
Traf1P39428 Gm24303-201ENSMUST00000178237 126 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Gm3605-201ENSMUST00000185858 440 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Gm8419-201ENSMUST00000189886 412 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Gm18407-201ENSMUST00000192126 790 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Gm38343-201ENSMUST00000195786 1060 ntTSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Oaz3-204ENSMUST00000199678 935 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Gm43126-201ENSMUST00000201546 429 ntTSL 3 BASIC6.86□□□□□ -1.31
Traf1P39428 Gm39336-201ENSMUST00000214933 260 ntTSL 3 BASIC6.86□□□□□ -1.31
Traf1P39428 AV026068-220ENSMUST00000224153 1147 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Vmn1r89-201ENSMUST00000053008 951 ntAPPRIS P2 BASIC6.86□□□□□ -1.31
Traf1P39428 Tmem69-201ENSMUST00000069674 974 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
Traf1P39428 S100a9-201ENSMUST00000069960 512 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Olfr356-201ENSMUST00000095021 948 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
Traf1P39428 Olfr1217-201ENSMUST00000099799 1105 ntAPPRIS P1 BASIC6.86□□□□□ -1.31
Traf1P39428 Olfr110-202ENSMUST00000216472 1721 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Olfr705-203ENSMUST00000216009 3085 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 D830032E09Rik-202ENSMUST00000189497 1632 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Olfr510-204ENSMUST00000217170 2997 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Spag5-201ENSMUST00000045026 3887 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
Traf1P39428 Hrnr-201ENSMUST00000090856 10656 ntAPPRIS P2 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Olfr1386-203ENSMUST00000213674 2457 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 9430062P05Rik-201ENSMUST00000192703 3345 ntBASIC6.86□□□□□ -1.31
Traf1P39428 Atr-213ENSMUST00000215311 8102 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Gm4922-201ENSMUST00000055107 1950 ntAPPRIS P1 TSL 3 BASIC6.86□□□□□ -1.31
Traf1P39428 Mef2c-202ENSMUST00000163888 6277 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
Traf1P39428 Gm28322-201ENSMUST00000185627 1475 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Naip2-203ENSMUST00000167986 4356 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
Traf1P39428 Mmp13-201ENSMUST00000015394 2673 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Ceacam12-202ENSMUST00000108483 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Gm31218-202ENSMUST00000221428 1823 ntTSL 5 BASIC6.85□□□□□ -1.31
Traf1P39428 AC133498.1-201ENSMUST00000222871 2925 ntTSL 5 BASIC6.85□□□□□ -1.31
Traf1P39428 Trav14-3-201ENSMUST00000103589 384 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Traf1P39428 Trav14n-3-201ENSMUST00000103635 280 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Traf1P39428 Gm14382-201ENSMUST00000117374 437 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm12768-201ENSMUST00000120055 759 ntBASIC6.85□□□□□ -1.31
Traf1P39428 4930423M02Rik-202ENSMUST00000156903 1205 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Vmn1r91-201ENSMUST00000165330 924 ntAPPRIS P1 BASIC6.85□□□□□ -1.31
Traf1P39428 Vmn2r-ps4-201ENSMUST00000176989 1015 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm20069-201ENSMUST00000178938 545 ntTSL 2 BASIC6.85□□□□□ -1.31
Traf1P39428 Gm5430-201ENSMUST00000182525 915 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Mir7235-201ENSMUST00000183796 56 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm37958-201ENSMUST00000193131 430 ntTSL 3 BASIC6.85□□□□□ -1.31
Traf1P39428 Ighv1-27-201ENSMUST00000194473 340 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm37358-201ENSMUST00000195492 479 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm42961-201ENSMUST00000202023 181 ntBASIC6.85□□□□□ -1.31
Traf1P39428 1700019F05Rik-201ENSMUST00000202487 533 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Olfr162-ps1-201ENSMUST00000206015 934 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm17988-201ENSMUST00000208796 535 ntBASIC6.85□□□□□ -1.31
Traf1P39428 CT033754.1-201ENSMUST00000216941 531 ntTSL 3 BASIC6.85□□□□□ -1.31
Traf1P39428 Gm31698-203ENSMUST00000217115 690 ntTSL 5 BASIC6.85□□□□□ -1.31
Traf1P39428 AC166323.1-201ENSMUST00000217756 367 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm19073-201ENSMUST00000219978 555 ntBASIC6.85□□□□□ -1.31
Traf1P39428 AC122035.2-201ENSMUST00000228698 462 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Ang5-201ENSMUST00000066719 700 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Usp26-202ENSMUST00000114869 4133 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Usp26-201ENSMUST00000069509 4120 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Chd6-201ENSMUST00000039782 10515 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Bicd1-201ENSMUST00000003544 2928 ntAPPRIS ALT1 TSL 5 BASIC6.85□□□□□ -1.31
Traf1P39428 Cntn1-201ENSMUST00000000109 5646 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Gm14326-202ENSMUST00000108930 1807 ntAPPRIS P1 TSL 2 BASIC6.85□□□□□ -1.31
Traf1P39428 Olfr303-205ENSMUST00000216409 4106 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
Traf1P39428 Gm18757-201ENSMUST00000207938 3141 ntBASIC6.85□□□□□ -1.31
Traf1P39428 Gm28687-201ENSMUST00000187203 1494 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Gm29373-201ENSMUST00000190660 1494 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Pum2-203ENSMUST00000111123 4984 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
Traf1P39428 Zranb2-202ENSMUST00000106057 2737 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
Traf1P39428 Ncoa4-201ENSMUST00000111994 3343 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Epha4-204ENSMUST00000188797 3612 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Klrb1f-201ENSMUST00000032257 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Nlrp4a-202ENSMUST00000119386 3215 ntAPPRIS P2 TSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Smarca2-203ENSMUST00000112637 1962 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Olfr1340-203ENSMUST00000216242 3341 ntAPPRIS P1 TSL 3 BASIC6.84□□□□□ -1.31
Traf1P39428 Pja2-203ENSMUST00000172733 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Gm44777-202ENSMUST00000206492 1889 ntTSL 5 BASIC6.84□□□□□ -1.31
Traf1P39428 Gm36936-201ENSMUST00000194508 2749 ntBASIC6.84□□□□□ -1.31
Traf1P39428 Tom1l1-202ENSMUST00000107867 2439 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Pifo-201ENSMUST00000010280 956 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 C87499-202ENSMUST00000107142 672 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
Traf1P39428 Ccdc7b-203ENSMUST00000108745 1047 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 4933400A11Rik-203ENSMUST00000112102 1101 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
Traf1P39428 Gm14783-201ENSMUST00000118900 663 ntBASIC6.84□□□□□ -1.31
Retrieved 100 of 76,532 protein–RNA pairs in 81.9 ms