Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Flg-201ENSMUST00000050758 1488 ntBASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Zfp783-201ENSMUST00000095946 670 ntBASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ddx56Q9D0R4 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Rarb-207ENSMUST00000225921 2756 ntBASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ddx56Q9D0R4 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx56Q9D0R4 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx56Q9D0R4 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ddx56Q9D0R4 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Ddx56Q9D0R4 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ddx56Q9D0R4 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ddx56Q9D0R4 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Gm15847-201ENSMUST00000121417 1065 ntBASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ddx56Q9D0R4 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms