Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Gm13836-201ENSMUST00000121159 501 ntBASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Arhgef33-211ENSMUST00000225658 473 ntBASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ushbp1Q8R370 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Ushbp1Q8R370 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Ushbp1Q8R370 Gm5643-201ENSMUST00000117081 966 ntBASIC20.09■□□□□ 0.81
Ushbp1Q8R370 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.09■□□□□ 0.81
Ushbp1Q8R370 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ushbp1Q8R370 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ushbp1Q8R370 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ushbp1Q8R370 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ushbp1Q8R370 Gm6576-201ENSMUST00000169678 883 ntBASIC20.08■□□□□ 0.81
Ushbp1Q8R370 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Ushbp1Q8R370 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ushbp1Q8R370 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ushbp1Q8R370 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Ushbp1Q8R370 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ushbp1Q8R370 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ushbp1Q8R370 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ushbp1Q8R370 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ushbp1Q8R370 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ushbp1Q8R370 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ushbp1Q8R370 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Gm2559-201ENSMUST00000201323 363 ntBASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ushbp1Q8R370 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ushbp1Q8R370 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 11.2 ms