Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Mir6349-201ENSMUST00000184059 97 ntBASIC21.2■□□□□ 0.98
Trim56Q80VI1 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Trim56Q80VI1 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Trim56Q80VI1 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Gm29241-201ENSMUST00000189260 1096 ntBASIC21.18■□□□□ 0.98
Trim56Q80VI1 Gm37292-201ENSMUST00000192062 758 ntBASIC21.18■□□□□ 0.98
Trim56Q80VI1 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC21.18■□□□□ 0.98
Trim56Q80VI1 AC153881.1-201ENSMUST00000214448 284 ntBASIC21.18■□□□□ 0.98
Trim56Q80VI1 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim56Q80VI1 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Gm13181-201ENSMUST00000120117 1069 ntBASIC21.17■□□□□ 0.98
Trim56Q80VI1 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Gm43183-201ENSMUST00000200632 547 ntBASIC21.17■□□□□ 0.98
Trim56Q80VI1 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim56Q80VI1 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim56Q80VI1 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Dmtn-207ENSMUST00000228001 2437 ntBASIC21.15■□□□□ 0.98
Trim56Q80VI1 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC21.15■□□□□ 0.98
Trim56Q80VI1 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.15■□□□□ 0.98
Trim56Q80VI1 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim56Q80VI1 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim56Q80VI1 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Trim56Q80VI1 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Trim56Q80VI1 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
Trim56Q80VI1 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim56Q80VI1 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.14■□□□□ 0.97
Trim56Q80VI1 AC166341.7-201ENSMUST00000221698 126 ntBASIC21.14■□□□□ 0.97
Trim56Q80VI1 CT010444.2-201ENSMUST00000217877 1629 ntBASIC21.14■□□□□ 0.97
Trim56Q80VI1 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trim56Q80VI1 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim56Q80VI1 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim56Q80VI1 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC21.13■□□□□ 0.97
Trim56Q80VI1 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
Trim56Q80VI1 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms