Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx55Q6ZPL9 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.51■□□□□ 0.87
Ddx55Q6ZPL9 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx55Q6ZPL9 Gm8258-201ENSMUST00000055593 1449 ntBASIC20.51■□□□□ 0.87
Ddx55Q6ZPL9 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx55Q6ZPL9 Notumos-201ENSMUST00000151998 2659 ntBASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx55Q6ZPL9 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 Gm7791-201ENSMUST00000219066 539 ntBASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx55Q6ZPL9 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Gm7638-201ENSMUST00000121348 967 ntBASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx55Q6ZPL9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx55Q6ZPL9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Gm13474-201ENSMUST00000122466 815 ntBASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Gm7370-201ENSMUST00000219471 767 ntBASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx55Q6ZPL9 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Gm24841-201ENSMUST00000158676 357 ntBASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx55Q6ZPL9 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Gm17971-201ENSMUST00000190239 806 ntBASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Gm21559-201ENSMUST00000220638 855 ntBASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Gm8587-201ENSMUST00000076538 843 ntBASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx55Q6ZPL9 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC20.43■□□□□ 0.86
Ddx55Q6ZPL9 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms