Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC18.17■□□□□ 0.5
Sh3rf1Q69ZI1 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf1Q69ZI1 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Sh3rf1Q69ZI1 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Sh3rf1Q69ZI1 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.15■□□□□ 0.5
Sh3rf1Q69ZI1 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Sh3rf1Q69ZI1 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC18.14■□□□□ 0.5
Sh3rf1Q69ZI1 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Sh3rf1Q69ZI1 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.14■□□□□ 0.5
Sh3rf1Q69ZI1 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Gm7290-201ENSMUST00000104990 617 ntBASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Gm12918-201ENSMUST00000120234 636 ntBASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Gm15710-201ENSMUST00000121821 636 ntBASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Gm5075-201ENSMUST00000196916 622 ntBASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Sh3rf1Q69ZI1 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.13■□□□□ 0.49
Sh3rf1Q69ZI1 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Gm13534-201ENSMUST00000121169 513 ntBASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Gm10655-201ENSMUST00000098658 1397 ntBASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Sh3rf1Q69ZI1 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms