Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm7213-201ENSMUST00000215977 950 ntBASIC20.25■□□□□ 0.83
Col11a1Q61245 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Col11a1Q61245 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col11a1Q61245 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC20.25■□□□□ 0.83
Col11a1Q61245 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Col11a1Q61245 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col11a1Q61245 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col11a1Q61245 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.24■□□□□ 0.83
Col11a1Q61245 Gm34391-201ENSMUST00000203706 907 ntBASIC20.24■□□□□ 0.83
Col11a1Q61245 Gm10566-201ENSMUST00000086739 996 ntBASIC20.24■□□□□ 0.83
Col11a1Q61245 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col11a1Q61245 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
Col11a1Q61245 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col11a1Q61245 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col11a1Q61245 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col11a1Q61245 Gm24589-201ENSMUST00000116692 94 ntBASIC20.23■□□□□ 0.83
Col11a1Q61245 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col11a1Q61245 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
Col11a1Q61245 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col11a1Q61245 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col11a1Q61245 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC20.23■□□□□ 0.83
Col11a1Q61245 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Col11a1Q61245 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col11a1Q61245 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col11a1Q61245 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col11a1Q61245 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.22■□□□□ 0.83
Col11a1Q61245 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.22■□□□□ 0.83
Col11a1Q61245 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col11a1Q61245 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.21■□□□□ 0.83
Col11a1Q61245 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.21■□□□□ 0.83
Col11a1Q61245 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Col11a1Q61245 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col11a1Q61245 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC20.2■□□□□ 0.82
Col11a1Q61245 Gm11355-201ENSMUST00000121120 306 ntBASIC20.2■□□□□ 0.82
Col11a1Q61245 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.2■□□□□ 0.82
Col11a1Q61245 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col11a1Q61245 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC20.2■□□□□ 0.82
Col11a1Q61245 Spr-ps1-201ENSMUST00000089584 605 ntBASIC20.2■□□□□ 0.82
Col11a1Q61245 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Col11a1Q61245 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col11a1Q61245 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Col11a1Q61245 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.2■□□□□ 0.82
Col11a1Q61245 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col11a1Q61245 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col11a1Q61245 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col11a1Q61245 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.19■□□□□ 0.82
Col11a1Q61245 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Mir770-201ENSMUST00000103252 94 ntBASIC20.19■□□□□ 0.82
Col11a1Q61245 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC20.19■□□□□ 0.82
Col11a1Q61245 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Col11a1Q61245 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col11a1Q61245 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col11a1Q61245 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC20.18■□□□□ 0.82
Col11a1Q61245 Gm18115-201ENSMUST00000221209 621 ntBASIC20.18■□□□□ 0.82
Col11a1Q61245 Il3ra-202ENSMUST00000223589 738 ntBASIC20.18■□□□□ 0.82
Col11a1Q61245 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC20.18■□□□□ 0.82
Col11a1Q61245 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col11a1Q61245 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC20.18■□□□□ 0.82
Col11a1Q61245 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col11a1Q61245 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC20.17■□□□□ 0.82
Col11a1Q61245 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC20.17■□□□□ 0.82
Col11a1Q61245 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.17■□□□□ 0.82
Col11a1Q61245 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col11a1Q61245 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col11a1Q61245 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Col11a1Q61245 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col11a1Q61245 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col11a1Q61245 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col11a1Q61245 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col11a1Q61245 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms