Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Cln3Q61124 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Cln3Q61124 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cln3Q61124 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cln3Q61124 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cln3Q61124 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cln3Q61124 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cln3Q61124 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cln3Q61124 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Cln3Q61124 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Cln3Q61124 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Cln3Q61124 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC19.73■□□□□ 0.75
Cln3Q61124 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cln3Q61124 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cln3Q61124 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.72■□□□□ 0.75
Cln3Q61124 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cln3Q61124 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cln3Q61124 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Cln3Q61124 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cln3Q61124 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Cln3Q61124 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Cln3Q61124 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Cln3Q61124 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Cln3Q61124 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cln3Q61124 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Cln3Q61124 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC19.71■□□□□ 0.75
Cln3Q61124 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC19.71■□□□□ 0.75
Cln3Q61124 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC19.71■□□□□ 0.75
Cln3Q61124 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.71■□□□□ 0.75
Cln3Q61124 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
Cln3Q61124 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cln3Q61124 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Cln3Q61124 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cln3Q61124 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cln3Q61124 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.7■□□□□ 0.74
Cln3Q61124 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Cln3Q61124 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.7■□□□□ 0.74
Cln3Q61124 Gm13401-201ENSMUST00000117074 291 ntBASIC19.7■□□□□ 0.74
Cln3Q61124 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cln3Q61124 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cln3Q61124 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.7■□□□□ 0.74
Cln3Q61124 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cln3Q61124 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.7■□□□□ 0.74
Cln3Q61124 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Cln3Q61124 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC19.69■□□□□ 0.74
Cln3Q61124 Gm33142-201ENSMUST00000193913 867 ntBASIC19.69■□□□□ 0.74
Cln3Q61124 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC19.69■□□□□ 0.74
Cln3Q61124 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC19.69■□□□□ 0.74
Cln3Q61124 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cln3Q61124 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Gm22697-201ENSMUST00000175194 63 ntBASIC19.68■□□□□ 0.74
Cln3Q61124 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.68■□□□□ 0.74
Cln3Q61124 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cln3Q61124 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Cln3Q61124 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms