Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf180Q3U827 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf180Q3U827 Gm15372-201ENSMUST00000120729 834 ntBASIC21.22■□□□□ 0.99
Rnf180Q3U827 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC21.22■□□□□ 0.99
Rnf180Q3U827 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC21.22■□□□□ 0.99
Rnf180Q3U827 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf180Q3U827 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf180Q3U827 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Gm8097-201ENSMUST00000117903 829 ntBASIC21.21■□□□□ 0.99
Rnf180Q3U827 Gm7862-201ENSMUST00000121461 292 ntBASIC21.21■□□□□ 0.99
Rnf180Q3U827 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf180Q3U827 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Rnf180Q3U827 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Gm9731-201ENSMUST00000209480 747 ntBASIC21.2■□□□□ 0.98
Rnf180Q3U827 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 AC122351.1-201ENSMUST00000220467 126 ntBASIC21.2■□□□□ 0.98
Rnf180Q3U827 Bloc1s5-203ENSMUST00000224902 612 ntBASIC21.2■□□□□ 0.98
Rnf180Q3U827 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf180Q3U827 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Gm43438-201ENSMUST00000198133 379 ntBASIC21.19■□□□□ 0.98
Rnf180Q3U827 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Cxcl14-202ENSMUST00000224801 1467 ntBASIC21.19■□□□□ 0.98
Rnf180Q3U827 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.19■□□□□ 0.98
Rnf180Q3U827 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Gm24513-201ENSMUST00000174964 138 ntBASIC21.18■□□□□ 0.98
Rnf180Q3U827 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Gm27397-201ENSMUST00000184997 107 ntBASIC21.18■□□□□ 0.98
Rnf180Q3U827 Gm6376-201ENSMUST00000209407 580 ntBASIC21.18■□□□□ 0.98
Rnf180Q3U827 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf180Q3U827 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rnf180Q3U827 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rnf180Q3U827 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rnf180Q3U827 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC21.17■□□□□ 0.98
Rnf180Q3U827 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC21.17■□□□□ 0.98
Rnf180Q3U827 Gm12350-201ENSMUST00000121208 462 ntBASIC21.17■□□□□ 0.98
Rnf180Q3U827 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC21.17■□□□□ 0.98
Rnf180Q3U827 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms