Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Col6a1Q04857 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col6a1Q04857 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.77■□□□□ 0.76
Col6a1Q04857 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col6a1Q04857 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Col6a1Q04857 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col6a1Q04857 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Col6a1Q04857 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.77■□□□□ 0.75
Col6a1Q04857 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.76■□□□□ 0.75
Col6a1Q04857 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Col6a1Q04857 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
Col6a1Q04857 Gm14859-201ENSMUST00000117752 357 ntBASIC19.76■□□□□ 0.75
Col6a1Q04857 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.76■□□□□ 0.75
Col6a1Q04857 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.76■□□□□ 0.75
Col6a1Q04857 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col6a1Q04857 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col6a1Q04857 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Col6a1Q04857 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col6a1Q04857 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.75■□□□□ 0.75
Col6a1Q04857 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC19.75■□□□□ 0.75
Col6a1Q04857 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Col6a1Q04857 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Col6a1Q04857 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.75■□□□□ 0.75
Col6a1Q04857 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Col6a1Q04857 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Col6a1Q04857 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC19.74■□□□□ 0.75
Col6a1Q04857 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Col6a1Q04857 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Col6a1Q04857 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.73■□□□□ 0.75
Col6a1Q04857 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
Col6a1Q04857 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Col6a1Q04857 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC19.73■□□□□ 0.75
Col6a1Q04857 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
Col6a1Q04857 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Col6a1Q04857 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Col6a1Q04857 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.72■□□□□ 0.75
Col6a1Q04857 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.72■□□□□ 0.75
Col6a1Q04857 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Col6a1Q04857 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Col6a1Q04857 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Col6a1Q04857 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Col6a1Q04857 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Col6a1Q04857 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.71■□□□□ 0.75
Col6a1Q04857 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Col6a1Q04857 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Gm17971-201ENSMUST00000190239 806 ntBASIC19.71■□□□□ 0.75
Col6a1Q04857 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms