Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Hmgb1P63158 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
Hmgb1P63158 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb1P63158 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb1P63158 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Hmgb1P63158 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.72■□□□□ 0.75
Hmgb1P63158 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb1P63158 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Hmgb1P63158 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.71■□□□□ 0.75
Hmgb1P63158 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.71■□□□□ 0.75
Hmgb1P63158 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Hmgb1P63158 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.71■□□□□ 0.75
Hmgb1P63158 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb1P63158 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Hmgb1P63158 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb1P63158 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Hmgb1P63158 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.69■□□□□ 0.74
Hmgb1P63158 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.69■□□□□ 0.74
Hmgb1P63158 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb1P63158 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC19.68■□□□□ 0.74
Hmgb1P63158 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Hmgb1P63158 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Hmgb1P63158 Gm6365-201ENSMUST00000054711 744 ntBASIC19.68■□□□□ 0.74
Hmgb1P63158 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
Hmgb1P63158 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.68■□□□□ 0.74
Hmgb1P63158 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb1P63158 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.67■□□□□ 0.74
Hmgb1P63158 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.67■□□□□ 0.74
Hmgb1P63158 Gm18284-201ENSMUST00000172604 624 ntBASIC19.67■□□□□ 0.74
Hmgb1P63158 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.67■□□□□ 0.74
Hmgb1P63158 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.67■□□□□ 0.74
Hmgb1P63158 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Hmgb1P63158 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb1P63158 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Hmgb1P63158 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Gm7290-201ENSMUST00000104990 617 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 Gm12918-201ENSMUST00000120234 636 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 Gm15710-201ENSMUST00000121821 636 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.66■□□□□ 0.74
Hmgb1P63158 Gm5075-201ENSMUST00000196916 622 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.66■□□□□ 0.74
Hmgb1P63158 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
Hmgb1P63158 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb1P63158 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms