Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Cdh11P55288 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC16.34■□□□□ 0.21
Cdh11P55288 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Mir5133-201ENSMUST00000174955 77 ntBASIC16.34■□□□□ 0.21
Cdh11P55288 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.34■□□□□ 0.21
Cdh11P55288 Gm42555-201ENSMUST00000199304 1039 ntBASIC16.34■□□□□ 0.21
Cdh11P55288 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Cdh11P55288 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Cdh11P55288 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Cdh11P55288 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdh11P55288 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdh11P55288 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Cdh11P55288 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdh11P55288 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Cdh11P55288 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.33■□□□□ 0.2
Cdh11P55288 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Cdh11P55288 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC16.33■□□□□ 0.2
Cdh11P55288 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Cdh11P55288 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Cdh11P55288 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC16.32■□□□□ 0.2
Cdh11P55288 Fst-202ENSMUST00000223640 2612 ntBASIC16.32■□□□□ 0.2
Cdh11P55288 AC112142.1-201ENSMUST00000228796 918 ntBASIC16.32■□□□□ 0.2
Cdh11P55288 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC16.32■□□□□ 0.2
Cdh11P55288 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cdh11P55288 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cdh11P55288 Gm7860-201ENSMUST00000121190 879 ntBASIC16.31■□□□□ 0.2
Cdh11P55288 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.31■□□□□ 0.2
Cdh11P55288 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cdh11P55288 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.31■□□□□ 0.2
Cdh11P55288 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Cdh11P55288 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
Cdh11P55288 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.3■□□□□ 0.2
Cdh11P55288 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cdh11P55288 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Cdh11P55288 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Cdh11P55288 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cdh11P55288 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.29■□□□□ 0.2
Cdh11P55288 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms