Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Sox1P53783 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.35■□□□□ 0.53
Sox1P53783 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.35■□□□□ 0.53
Sox1P53783 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 Gm7791-201ENSMUST00000219066 539 ntBASIC18.35■□□□□ 0.53
Sox1P53783 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Sox1P53783 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Sox1P53783 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.35■□□□□ 0.53
Sox1P53783 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox1P53783 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox1P53783 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox1P53783 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Sox1P53783 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Sox1P53783 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox1P53783 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.34■□□□□ 0.53
Sox1P53783 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox1P53783 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.34■□□□□ 0.53
Sox1P53783 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC18.34■□□□□ 0.53
Sox1P53783 Gm6623-201ENSMUST00000173570 544 ntBASIC18.34■□□□□ 0.53
Sox1P53783 Gm43347-201ENSMUST00000200226 580 ntBASIC18.34■□□□□ 0.53
Sox1P53783 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Sox1P53783 Gm43006-201ENSMUST00000197702 1602 ntBASIC18.34■□□□□ 0.53
Sox1P53783 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Sox1P53783 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sox1P53783 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Sox1P53783 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Sox1P53783 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Sox1P53783 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
Sox1P53783 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox1P53783 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox1P53783 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Sox1P53783 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Sox1P53783 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox1P53783 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox1P53783 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Sox1P53783 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
Sox1P53783 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Olfr129-201ENSMUST00000122318 993 ntBASIC18.32■□□□□ 0.52
Sox1P53783 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC18.32■□□□□ 0.52
Sox1P53783 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.32■□□□□ 0.52
Sox1P53783 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC18.32■□□□□ 0.52
Sox1P53783 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Sox1P53783 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.32■□□□□ 0.52
Sox1P53783 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Sox1P53783 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox1P53783 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox1P53783 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Sox1P53783 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox1P53783 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC18.31■□□□□ 0.52
Sox1P53783 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC18.31■□□□□ 0.52
Sox1P53783 Gm7213-201ENSMUST00000215977 950 ntBASIC18.31■□□□□ 0.52
Sox1P53783 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox1P53783 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox1P53783 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Sox1P53783 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox1P53783 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox1P53783 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox1P53783 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox1P53783 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox1P53783 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.3■□□□□ 0.52
Sox1P53783 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Sox1P53783 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Sox1P53783 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.3■□□□□ 0.52
Sox1P53783 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Sox1P53783 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Sox1P53783 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Sox1P53783 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.3■□□□□ 0.52
Sox1P53783 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox1P53783 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sox1P53783 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.29■□□□□ 0.52
Sox1P53783 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox1P53783 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Sox1P53783 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
Sox1P53783 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Sox1P53783 Mir2861-201ENSMUST00000175539 82 ntBASIC18.29■□□□□ 0.52
Sox1P53783 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18.29■□□□□ 0.52
Sox1P53783 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Sox1P53783 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Sox1P53783 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Sox1P53783 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC18.29■□□□□ 0.52
Sox1P53783 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms