Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Ercc3P49135 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC21.22■□□□□ 0.99
Ercc3P49135 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Alkbh1-212ENSMUST00000185301 408 ntBASIC21.22■□□□□ 0.99
Ercc3P49135 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.22■□□□□ 0.99
Ercc3P49135 Gm38285-201ENSMUST00000192928 922 ntBASIC21.22■□□□□ 0.99
Ercc3P49135 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC21.22■□□□□ 0.99
Ercc3P49135 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.22■□□□□ 0.99
Ercc3P49135 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Ercc3P49135 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC21.22■□□□□ 0.99
Ercc3P49135 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ercc3P49135 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC21.21■□□□□ 0.99
Ercc3P49135 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ercc3P49135 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Ercc3P49135 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
Ercc3P49135 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ercc3P49135 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC21.19■□□□□ 0.98
Ercc3P49135 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
Ercc3P49135 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC21.19■□□□□ 0.98
Ercc3P49135 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ercc3P49135 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC21.18■□□□□ 0.98
Ercc3P49135 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ercc3P49135 Dmtn-207ENSMUST00000228001 2437 ntBASIC21.18■□□□□ 0.98
Ercc3P49135 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ercc3P49135 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC21.18■□□□□ 0.98
Ercc3P49135 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ercc3P49135 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ercc3P49135 Gm5643-201ENSMUST00000117081 966 ntBASIC21.18■□□□□ 0.98
Ercc3P49135 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.18■□□□□ 0.98
Ercc3P49135 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ercc3P49135 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC21.18■□□□□ 0.98
Ercc3P49135 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.17■□□□□ 0.98
Ercc3P49135 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC21.17■□□□□ 0.98
Ercc3P49135 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
Ercc3P49135 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Gm42939-201ENSMUST00000197514 2205 ntBASIC21.17■□□□□ 0.98
Ercc3P49135 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ercc3P49135 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.16■□□□□ 0.98
Ercc3P49135 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC21.16■□□□□ 0.98
Ercc3P49135 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 Gm22240-201ENSMUST00000175225 82 ntBASIC21.16■□□□□ 0.98
Ercc3P49135 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 Gm10698-201ENSMUST00000182663 604 ntBASIC21.16■□□□□ 0.98
Ercc3P49135 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ercc3P49135 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC21.16■□□□□ 0.98
Ercc3P49135 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ercc3P49135 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
Ercc3P49135 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ercc3P49135 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Ercc3P49135 Nrn1-203ENSMUST00000223611 1443 ntBASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms