Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RaraP11416 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
RaraP11416 AV356131-201ENSMUST00000206201 750 ntBASIC19.39■□□□□ 0.69
RaraP11416 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RaraP11416 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RaraP11416 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RaraP11416 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RaraP11416 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
RaraP11416 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.39■□□□□ 0.69
RaraP11416 Idnk-204ENSMUST00000226010 1898 ntBASIC19.39■□□□□ 0.69
RaraP11416 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RaraP11416 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.38■□□□□ 0.69
RaraP11416 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.38■□□□□ 0.69
RaraP11416 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Gm5874-201ENSMUST00000096101 508 ntBASIC19.38■□□□□ 0.69
RaraP11416 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RaraP11416 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
RaraP11416 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
RaraP11416 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC19.37■□□□□ 0.69
RaraP11416 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.37■□□□□ 0.69
RaraP11416 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.37■□□□□ 0.69
RaraP11416 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RaraP11416 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
RaraP11416 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.36■□□□□ 0.69
RaraP11416 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RaraP11416 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RaraP11416 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
RaraP11416 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
RaraP11416 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 Gm8969-201ENSMUST00000199694 526 ntBASIC19.35■□□□□ 0.69
RaraP11416 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.35■□□□□ 0.69
RaraP11416 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RaraP11416 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
RaraP11416 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Gm13509-201ENSMUST00000119733 1308 ntBASIC19.34■□□□□ 0.69
RaraP11416 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
RaraP11416 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.34■□□□□ 0.69
RaraP11416 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.34■□□□□ 0.69
RaraP11416 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RaraP11416 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RaraP11416 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RaraP11416 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.33■□□□□ 0.69
RaraP11416 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
RaraP11416 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
RaraP11416 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RaraP11416 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.33■□□□□ 0.68
RaraP11416 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.33■□□□□ 0.68
RaraP11416 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.33■□□□□ 0.68
RaraP11416 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.33■□□□□ 0.68
RaraP11416 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.33■□□□□ 0.68
RaraP11416 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RaraP11416 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
RaraP11416 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms