Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC16.9■□□□□ 0.3
Lire1P11260 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lire1P11260 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Lire1P11260 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Lire1P11260 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lire1P11260 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.9■□□□□ 0.3
Lire1P11260 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Lire1P11260 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Lire1P11260 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Lire1P11260 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Lire1P11260 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lire1P11260 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Lire1P11260 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Lire1P11260 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC16.88■□□□□ 0.29
Lire1P11260 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Lire1P11260 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.88■□□□□ 0.29
Lire1P11260 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lire1P11260 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.87■□□□□ 0.29
Lire1P11260 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Lire1P11260 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Lire1P11260 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
Lire1P11260 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Lire1P11260 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Lire1P11260 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC16.86■□□□□ 0.29
Lire1P11260 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC16.86■□□□□ 0.29
Lire1P11260 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Lire1P11260 Dmtn-207ENSMUST00000228001 2437 ntBASIC16.86■□□□□ 0.29
Lire1P11260 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.85■□□□□ 0.29
Lire1P11260 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 AC126028.2-201ENSMUST00000228100 1833 ntBASIC16.85■□□□□ 0.29
Lire1P11260 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
Lire1P11260 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC16.85■□□□□ 0.29
Lire1P11260 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC16.85■□□□□ 0.29
Lire1P11260 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Lire1P11260 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC16.84■□□□□ 0.29
Lire1P11260 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
Lire1P11260 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Lire1P11260 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Lire1P11260 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Lire1P11260 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.84■□□□□ 0.29
Lire1P11260 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms