Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vti1aO89116 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vti1aO89116 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vti1aO89116 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vti1aO89116 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Vti1aO89116 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Vti1aO89116 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Vti1aO89116 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Vti1aO89116 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.34■□□□□ 0.69
Vti1aO89116 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vti1aO89116 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Vti1aO89116 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Vti1aO89116 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.33■□□□□ 0.69
Vti1aO89116 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Vti1aO89116 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Vti1aO89116 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Vti1aO89116 Gm29994-201ENSMUST00000195495 1193 ntBASIC19.33■□□□□ 0.68
Vti1aO89116 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.33■□□□□ 0.68
Vti1aO89116 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vti1aO89116 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.32■□□□□ 0.68
Vti1aO89116 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.32■□□□□ 0.68
Vti1aO89116 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.32■□□□□ 0.68
Vti1aO89116 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Vti1aO89116 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.32■□□□□ 0.68
Vti1aO89116 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vti1aO89116 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Vti1aO89116 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
Vti1aO89116 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.31■□□□□ 0.68
Vti1aO89116 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Vti1aO89116 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.31■□□□□ 0.68
Vti1aO89116 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.31■□□□□ 0.68
Vti1aO89116 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.31■□□□□ 0.68
Vti1aO89116 Mtag2-201ENSMUST00000058665 714 ntBASIC19.31■□□□□ 0.68
Vti1aO89116 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vti1aO89116 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.3■□□□□ 0.68
Vti1aO89116 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.3■□□□□ 0.68
Vti1aO89116 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vti1aO89116 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vti1aO89116 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vti1aO89116 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vti1aO89116 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vti1aO89116 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.29■□□□□ 0.68
Vti1aO89116 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.29■□□□□ 0.68
Vti1aO89116 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vti1aO89116 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms