Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Pcdhgb8A0A140LI48 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdhgb8A0A140LI48 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdhgb8A0A140LI48 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdhgb8A0A140LI48 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Pcdhgb8A0A140LI48 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Pcdhgb8A0A140LI48 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 CT010467.1-202ENSMUST00000205406 714 ntBASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm10602-201ENSMUST00000098239 609 ntBASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Pcdhgb8A0A140LI48 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm43213-201ENSMUST00000151866 1790 ntBASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Pcdhgb8A0A140LI48 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Pcdhgb8A0A140LI48 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm38205-201ENSMUST00000192243 258 ntBASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Pcdhgb8A0A140LI48 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 Gm13534-201ENSMUST00000121169 513 ntBASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Pcdhgb8A0A140LI48 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.15■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms