Protein–RNA interactions for Protein: Q9WTU3

Scn8a, Sodium channel protein type 8 subunit alpha, mousemouse

Predictions only

Length 1,978 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn8aQ9WTU3 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.18■□□□□ 0.5
Scn8aQ9WTU3 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Gm21814-202ENSMUST00000203277 873 ntBASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Arhgef4-208ENSMUST00000211073 171 ntBASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Scn8aQ9WTU3 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Timm23-208ENSMUST00000226683 750 ntBASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Scn8aQ9WTU3 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Mir7071-201ENSMUST00000184847 69 ntBASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.15■□□□□ 0.5
Scn8aQ9WTU3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn8aQ9WTU3 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Scn8aQ9WTU3 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Scn8aQ9WTU3 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Gm29791-202ENSMUST00000207888 369 ntBASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Fst-202ENSMUST00000223640 2612 ntBASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Scn8aQ9WTU3 Idnk-204ENSMUST00000226010 1898 ntBASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Mir6982-201ENSMUST00000184354 68 ntBASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Gm15565-201ENSMUST00000118890 427 ntBASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Scn8aQ9WTU3 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.12■□□□□ 0.49
Scn8aQ9WTU3 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn8aQ9WTU3 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Scn8aQ9WTU3 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Scn8aQ9WTU3 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms