Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Prpf40aQ9R1C7 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Prpf40aQ9R1C7 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Prpf40aQ9R1C7 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Prpf40aQ9R1C7 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.78■□□□□ 0.76
Prpf40aQ9R1C7 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Prpf40aQ9R1C7 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Prpf40aQ9R1C7 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Prpf40aQ9R1C7 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Prpf40aQ9R1C7 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Gm22325-201ENSMUST00000158904 308 ntBASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prpf40aQ9R1C7 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.75
Prpf40aQ9R1C7 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Gm26524-201ENSMUST00000192339 390 ntBASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prpf40aQ9R1C7 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.75■□□□□ 0.75
Prpf40aQ9R1C7 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Gm5408-201ENSMUST00000197998 747 ntBASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Rab3c-203ENSMUST00000224180 967 ntBASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prpf40aQ9R1C7 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms