Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Scn11aQ9R053 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Gm9103-201ENSMUST00000119371 405 ntBASIC21.48■■□□□ 1.03
Scn11aQ9R053 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Gm17971-201ENSMUST00000190239 806 ntBASIC21.48■■□□□ 1.03
Scn11aQ9R053 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scn11aQ9R053 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Gm25925-201ENSMUST00000158314 306 ntBASIC21.47■■□□□ 1.03
Scn11aQ9R053 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Gm6345-202ENSMUST00000180900 204 ntBASIC21.47■■□□□ 1.03
Scn11aQ9R053 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Scn11aQ9R053 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Gm29791-202ENSMUST00000207888 369 ntBASIC21.46■■□□□ 1.03
Scn11aQ9R053 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Gm23634-201ENSMUST00000175071 91 ntBASIC21.46■■□□□ 1.03
Scn11aQ9R053 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Gm4974-201ENSMUST00000209974 875 ntBASIC21.46■■□□□ 1.03
Scn11aQ9R053 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Scn11aQ9R053 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Scn11aQ9R053 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Scn11aQ9R053 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Gm38027-201ENSMUST00000192315 235 ntBASIC21.45■■□□□ 1.02
Scn11aQ9R053 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scn11aQ9R053 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC21.44■■□□□ 1.02
Scn11aQ9R053 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn11aQ9R053 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Scn11aQ9R053 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Scn11aQ9R053 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC21.43■■□□□ 1.02
Scn11aQ9R053 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scn11aQ9R053 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn11aQ9R053 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn11aQ9R053 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Scn11aQ9R053 Ank2-226ENSMUST00000189368 339 ntBASIC21.42■■□□□ 1.02
Scn11aQ9R053 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn11aQ9R053 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn11aQ9R053 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Scn11aQ9R053 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms