Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Col4a4Q9QZR9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Col4a4Q9QZR9 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Mir8098-201ENSMUST00000184011 137 ntBASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Gm28659-201ENSMUST00000188013 759 ntBASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Gm6443-201ENSMUST00000203599 874 ntBASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col4a4Q9QZR9 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Col4a4Q9QZR9 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Gm37025-201ENSMUST00000195159 829 ntBASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Gm5712-201ENSMUST00000199748 1043 ntBASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col4a4Q9QZR9 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col4a4Q9QZR9 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Il3ra-202ENSMUST00000223589 738 ntBASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Golph3-202ENSMUST00000226517 2359 ntBASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col4a4Q9QZR9 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Gm10418-201ENSMUST00000100943 576 ntBASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Gm27742-201ENSMUST00000184667 60 ntBASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col4a4Q9QZR9 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Col4a4Q9QZR9 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col4a4Q9QZR9 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms