Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Gm5408-201ENSMUST00000197998 747 ntBASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Gm10602-201ENSMUST00000098239 609 ntBASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx56Q9D0R4 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx56Q9D0R4 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 AC122769.4-201ENSMUST00000228166 901 ntBASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Ddx56Q9D0R4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ddx56Q9D0R4 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ddx56Q9D0R4 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Ddx56Q9D0R4 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Ddx56Q9D0R4 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Gm38285-201ENSMUST00000192928 922 ntBASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Gm44672-201ENSMUST00000206944 1098 ntBASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Ddx56Q9D0R4 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Ddx56Q9D0R4 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms