Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Clp1Q99LI9 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Clp1Q99LI9 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.06■□□□□ 0.64
Clp1Q99LI9 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.05■□□□□ 0.64
Clp1Q99LI9 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.05■□□□□ 0.64
Clp1Q99LI9 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC19.05■□□□□ 0.64
Clp1Q99LI9 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Gm4974-201ENSMUST00000209974 875 ntBASIC19.04■□□□□ 0.64
Clp1Q99LI9 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.04■□□□□ 0.64
Clp1Q99LI9 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Clp1Q99LI9 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Clp1Q99LI9 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.03■□□□□ 0.64
Clp1Q99LI9 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Gm9103-201ENSMUST00000119371 405 ntBASIC19.03■□□□□ 0.64
Clp1Q99LI9 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Ank2-226ENSMUST00000189368 339 ntBASIC19.03■□□□□ 0.64
Clp1Q99LI9 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Clp1Q99LI9 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.03■□□□□ 0.64
Clp1Q99LI9 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Clp1Q99LI9 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Clp1Q99LI9 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Clp1Q99LI9 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Clp1Q99LI9 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Gm14859-201ENSMUST00000117752 357 ntBASIC19■□□□□ 0.63
Clp1Q99LI9 Gm25016-201ENSMUST00000158399 131 ntBASIC19■□□□□ 0.63
Clp1Q99LI9 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Clp1Q99LI9 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Clp1Q99LI9 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms