Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Gm8969-201ENSMUST00000199694 526 ntBASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lsm1Q8VC85 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lsm1Q8VC85 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Lsm1Q8VC85 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lsm1Q8VC85 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lsm1Q8VC85 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lsm1Q8VC85 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lsm1Q8VC85 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Lsm1Q8VC85 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 AV356131-201ENSMUST00000206201 750 ntBASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Gm5874-201ENSMUST00000096101 508 ntBASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Lsm1Q8VC85 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Lsm1Q8VC85 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Lsm1Q8VC85 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms