Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fst-202ENSMUST00000223640 2612 ntBASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Gm12896-201ENSMUST00000118430 226 ntBASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Tgds-204ENSMUST00000228543 1594 ntBASIC20.17■□□□□ 0.82
Ushbp1Q8R370 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ushbp1Q8R370 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ushbp1Q8R370 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
Ushbp1Q8R370 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ushbp1Q8R370 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ushbp1Q8R370 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ushbp1Q8R370 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ushbp1Q8R370 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ushbp1Q8R370 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Rarb-207ENSMUST00000225921 2756 ntBASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC20.11■□□□□ 0.81
Ushbp1Q8R370 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms