Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdhb7Q8CDY9 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.08■□□□□ 0.48
Pcdhb7Q8CDY9 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdhb7Q8CDY9 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Pcdhb7Q8CDY9 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pcdhb7Q8CDY9 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Pcdhb7Q8CDY9 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Gm8309-201ENSMUST00000206627 1448 ntBASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pcdhb7Q8CDY9 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Gm6365-201ENSMUST00000054711 744 ntBASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pcdhb7Q8CDY9 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.03■□□□□ 0.48
Pcdhb7Q8CDY9 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Gm27405-201ENSMUST00000184201 112 ntBASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhb7Q8CDY9 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdhb7Q8CDY9 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdhb7Q8CDY9 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdhb7Q8CDY9 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdhb7Q8CDY9 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
Pcdhb7Q8CDY9 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhb7Q8CDY9 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms