Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Trim56Q80VI1 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.27■■□□□ 1
Trim56Q80VI1 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim56Q80VI1 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim56Q80VI1 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim56Q80VI1 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
Trim56Q80VI1 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim56Q80VI1 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim56Q80VI1 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
Trim56Q80VI1 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim56Q80VI1 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim56Q80VI1 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim56Q80VI1 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Trim56Q80VI1 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim56Q80VI1 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim56Q80VI1 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim56Q80VI1 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Gm37374-201ENSMUST00000194954 1829 ntBASIC21.25■□□□□ 0.99
Trim56Q80VI1 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trim56Q80VI1 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim56Q80VI1 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Gm37820-201ENSMUST00000194021 2147 ntBASIC21.23■□□□□ 0.99
Trim56Q80VI1 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim56Q80VI1 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.23■□□□□ 0.99
Trim56Q80VI1 Gm42545-201ENSMUST00000202755 922 ntBASIC21.23■□□□□ 0.99
Trim56Q80VI1 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC21.23■□□□□ 0.99
Trim56Q80VI1 Gm18025-201ENSMUST00000221733 862 ntBASIC21.23■□□□□ 0.99
Trim56Q80VI1 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim56Q80VI1 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC21.23■□□□□ 0.99
Trim56Q80VI1 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Gm15378-201ENSMUST00000121894 207 ntBASIC21.22■□□□□ 0.99
Trim56Q80VI1 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Grk6-206ENSMUST00000224995 2971 ntBASIC21.22■□□□□ 0.99
Trim56Q80VI1 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC21.22■□□□□ 0.99
Trim56Q80VI1 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Gm10812-201ENSMUST00000099864 546 ntBASIC21.21■□□□□ 0.99
Trim56Q80VI1 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim56Q80VI1 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
Trim56Q80VI1 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 AC108858.1-201ENSMUST00000228461 1498 ntBASIC21.2■□□□□ 0.98
Trim56Q80VI1 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trim56Q80VI1 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms