Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Rif1Q6PR54 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC15.16■□□□□ 0.02
Rif1Q6PR54 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Mir1668-201ENSMUST00000184114 107 ntBASIC15.16■□□□□ 0.02
Rif1Q6PR54 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.16■□□□□ 0.02
Rif1Q6PR54 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC15.16■□□□□ 0.02
Rif1Q6PR54 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Rif1Q6PR54 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Gm10654-201ENSMUST00000098653 1633 ntBASIC15.15■□□□□ 0.02
Rif1Q6PR54 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Rif1Q6PR54 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Gm45328-201ENSMUST00000210942 917 ntBASIC15.14■□□□□ 0.01
Rif1Q6PR54 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Rif1Q6PR54 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Rif1Q6PR54 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rif1Q6PR54 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Snhg20-203ENSMUST00000182811 2153 ntBASIC15.12■□□□□ 0.01
Rif1Q6PR54 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Rif1Q6PR54 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC15.12■□□□□ 0.01
Rif1Q6PR54 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.12■□□□□ 0.01
Rif1Q6PR54 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms