Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Hmgb4Q6P8W9 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Gm11927-201ENSMUST00000118472 759 ntBASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Flg-201ENSMUST00000050758 1488 ntBASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hmgb4Q6P8W9 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hmgb4Q6P8W9 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hmgb4Q6P8W9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hmgb4Q6P8W9 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Hmgb4Q6P8W9 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Hmgb4Q6P8W9 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.77■□□□□ 0.59
Hmgb4Q6P8W9 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.77■□□□□ 0.59
Hmgb4Q6P8W9 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Hmgb4Q6P8W9 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Hmgb4Q6P8W9 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Gm13836-201ENSMUST00000121159 501 ntBASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Mtag2-201ENSMUST00000058665 714 ntBASIC18.76■□□□□ 0.59
Hmgb4Q6P8W9 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms