Protein–RNA interactions for Protein: Q6IFX3

Krt40, Keratin, type I cytoskeletal 40, mousemouse

Predictions only

Length 439 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt40Q6IFX3 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Krt40Q6IFX3 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Krt40Q6IFX3 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Gm20472-201ENSMUST00000174403 1240 ntBASIC21.23■□□□□ 0.99
Krt40Q6IFX3 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Arhgef4-208ENSMUST00000211073 171 ntBASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Odf3b-204ENSMUST00000227834 930 ntBASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Gm5417-201ENSMUST00000079706 384 ntBASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Krt40Q6IFX3 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 AC156016.1-201ENSMUST00000227190 1035 ntBASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Krt40Q6IFX3 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Timm23-208ENSMUST00000226683 750 ntBASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Krt40Q6IFX3 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Krt40Q6IFX3 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
Krt40Q6IFX3 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.99
Krt40Q6IFX3 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Iqck-206ENSMUST00000208658 2891 ntBASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Krt40Q6IFX3 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Krt40Q6IFX3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 AC135963.1-201ENSMUST00000211640 717 ntBASIC21.18■□□□□ 0.98
Krt40Q6IFX3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Krt40Q6IFX3 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Krt40Q6IFX3 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Krt40Q6IFX3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms