Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.19■□□□□ 0.5
Six4Q61321 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Six4Q61321 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.19■□□□□ 0.5
Six4Q61321 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six4Q61321 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.19■□□□□ 0.5
Six4Q61321 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Six4Q61321 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.18■□□□□ 0.5
Six4Q61321 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Six4Q61321 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Six4Q61321 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Six4Q61321 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.18■□□□□ 0.5
Six4Q61321 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.18■□□□□ 0.5
Six4Q61321 Gm44878-201ENSMUST00000205812 1295 ntBASIC18.18■□□□□ 0.5
Six4Q61321 AC135637.1-201ENSMUST00000227750 365 ntBASIC18.18■□□□□ 0.5
Six4Q61321 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.18■□□□□ 0.5
Six4Q61321 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Six4Q61321 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Six4Q61321 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.17■□□□□ 0.5
Six4Q61321 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
Six4Q61321 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Six4Q61321 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.17■□□□□ 0.5
Six4Q61321 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Six4Q61321 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Six4Q61321 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Six4Q61321 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Six4Q61321 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Six4Q61321 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Six4Q61321 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC18.16■□□□□ 0.5
Six4Q61321 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Six4Q61321 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Six4Q61321 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Six4Q61321 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Six4Q61321 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
Six4Q61321 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Six4Q61321 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.16■□□□□ 0.5
Six4Q61321 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.16■□□□□ 0.5
Six4Q61321 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Six4Q61321 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC18.15■□□□□ 0.5
Six4Q61321 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Six4Q61321 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Six4Q61321 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Six4Q61321 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Six4Q61321 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Six4Q61321 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Six4Q61321 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC18.14■□□□□ 0.49
Six4Q61321 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Six4Q61321 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.14■□□□□ 0.49
Six4Q61321 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Six4Q61321 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.13■□□□□ 0.49
Six4Q61321 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.13■□□□□ 0.49
Six4Q61321 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Six4Q61321 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.13■□□□□ 0.49
Six4Q61321 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Six4Q61321 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.12■□□□□ 0.49
Six4Q61321 Mir2861-201ENSMUST00000175539 82 ntBASIC18.12■□□□□ 0.49
Six4Q61321 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.12■□□□□ 0.49
Six4Q61321 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Six4Q61321 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms