Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
Ubr3Q5U430 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ubr3Q5U430 Hsf1-207ENSMUST00000228371 2102 ntBASIC22.04■■□□□ 1.12
Ubr3Q5U430 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Ubr3Q5U430 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ubr3Q5U430 Gm27389-201ENSMUST00000183622 195 ntBASIC22.04■■□□□ 1.12
Ubr3Q5U430 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ubr3Q5U430 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ubr3Q5U430 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ubr3Q5U430 Gm11950-201ENSMUST00000121615 838 ntBASIC22.03■■□□□ 1.12
Ubr3Q5U430 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC22.03■■□□□ 1.12
Ubr3Q5U430 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC22.03■■□□□ 1.12
Ubr3Q5U430 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ubr3Q5U430 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.12
Ubr3Q5U430 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Gm18958-201ENSMUST00000174258 762 ntBASIC22.01■■□□□ 1.11
Ubr3Q5U430 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Ubr3Q5U430 Gm10418-201ENSMUST00000100943 576 ntBASIC22■■□□□ 1.11
Ubr3Q5U430 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ubr3Q5U430 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC22■■□□□ 1.11
Ubr3Q5U430 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ubr3Q5U430 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Ubr3Q5U430 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Ubr3Q5U430 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC22■■□□□ 1.11
Ubr3Q5U430 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Ubr3Q5U430 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Ubr3Q5U430 Rncr4-201ENSMUST00000194541 2234 ntBASIC22■■□□□ 1.11
Ubr3Q5U430 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Ubr3Q5U430 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Ubr3Q5U430 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ubr3Q5U430 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Ubr3Q5U430 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ubr3Q5U430 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Ubr3Q5U430 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Ubr3Q5U430 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Gm37025-201ENSMUST00000195159 829 ntBASIC21.98■■□□□ 1.11
Ubr3Q5U430 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Gm7213-201ENSMUST00000215977 950 ntBASIC21.98■■□□□ 1.11
Ubr3Q5U430 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Ubr3Q5U430 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ubr3Q5U430 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ubr3Q5U430 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Ubr3Q5U430 Gm3272-201ENSMUST00000181181 1229 ntBASIC21.97■■□□□ 1.11
Ubr3Q5U430 Gm10566-201ENSMUST00000086739 996 ntBASIC21.97■■□□□ 1.11
Ubr3Q5U430 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ubr3Q5U430 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
Ubr3Q5U430 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ubr3Q5U430 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Ubr3Q5U430 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC21.96■■□□□ 1.11
Ubr3Q5U430 AC164629.2-201ENSMUST00000217916 270 ntBASIC21.96■■□□□ 1.11
Ubr3Q5U430 Il3ra-202ENSMUST00000223589 738 ntBASIC21.96■■□□□ 1.11
Ubr3Q5U430 Otx2os1-206ENSMUST00000228153 787 ntBASIC21.96■■□□□ 1.11
Ubr3Q5U430 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Ubr3Q5U430 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ubr3Q5U430 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ubr3Q5U430 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ubr3Q5U430 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Ubr3Q5U430 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms