Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp28Q5I043 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp28Q5I043 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.45■□□□□ 0.86
Usp28Q5I043 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp28Q5I043 Idnk-204ENSMUST00000226010 1898 ntBASIC20.45■□□□□ 0.86
Usp28Q5I043 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp28Q5I043 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp28Q5I043 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.45■□□□□ 0.86
Usp28Q5I043 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Usp28Q5I043 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Usp28Q5I043 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.44■□□□□ 0.86
Usp28Q5I043 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Usp28Q5I043 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.44■□□□□ 0.86
Usp28Q5I043 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp28Q5I043 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Usp28Q5I043 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.43■□□□□ 0.86
Usp28Q5I043 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.43■□□□□ 0.86
Usp28Q5I043 Gm26571-201ENSMUST00000181399 666 ntBASIC20.43■□□□□ 0.86
Usp28Q5I043 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.43■□□□□ 0.86
Usp28Q5I043 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp28Q5I043 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp28Q5I043 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.42■□□□□ 0.86
Usp28Q5I043 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp28Q5I043 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Usp28Q5I043 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Usp28Q5I043 Gm13509-201ENSMUST00000119733 1308 ntBASIC20.42■□□□□ 0.86
Usp28Q5I043 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp28Q5I043 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp28Q5I043 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Usp28Q5I043 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.41■□□□□ 0.86
Usp28Q5I043 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.41■□□□□ 0.86
Usp28Q5I043 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Usp28Q5I043 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp28Q5I043 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
Usp28Q5I043 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp28Q5I043 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp28Q5I043 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Usp28Q5I043 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp28Q5I043 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Usp28Q5I043 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.4■□□□□ 0.86
Usp28Q5I043 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.4■□□□□ 0.86
Usp28Q5I043 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Usp28Q5I043 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp28Q5I043 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Usp28Q5I043 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Usp28Q5I043 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp28Q5I043 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp28Q5I043 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp28Q5I043 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp28Q5I043 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Usp28Q5I043 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp28Q5I043 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp28Q5I043 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp28Q5I043 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp28Q5I043 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Usp28Q5I043 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.39■□□□□ 0.85
Usp28Q5I043 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.39■□□□□ 0.85
Usp28Q5I043 Gm8969-201ENSMUST00000199694 526 ntBASIC20.39■□□□□ 0.85
Usp28Q5I043 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Usp28Q5I043 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Usp28Q5I043 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp28Q5I043 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp28Q5I043 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp28Q5I043 Gm10849-201ENSMUST00000100397 618 ntBASIC20.38■□□□□ 0.85
Usp28Q5I043 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Usp28Q5I043 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.38■□□□□ 0.85
Usp28Q5I043 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.38■□□□□ 0.85
Usp28Q5I043 AC121598.2-201ENSMUST00000228376 2325 ntBASIC20.38■□□□□ 0.85
Usp28Q5I043 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp28Q5I043 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Usp28Q5I043 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 10.1 ms