Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Upf3bQ3ULL6 Dio3-201ENSMUST00000097228 1449 ntBASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Tgds-204ENSMUST00000228543 1594 ntBASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Zfp783-201ENSMUST00000095946 670 ntBASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Upf3bQ3ULL6 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Upf3bQ3ULL6 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Rarb-207ENSMUST00000225921 2756 ntBASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Gm12527-201ENSMUST00000117967 564 ntBASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Gm38285-201ENSMUST00000192928 922 ntBASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
Upf3bQ3ULL6 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Gm11927-201ENSMUST00000118472 759 ntBASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Upf3bQ3ULL6 Fst-202ENSMUST00000223640 2612 ntBASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Upf3bQ3ULL6 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Upf3bQ3ULL6 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms