Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Gm9988-201ENSMUST00000069786 435 ntBASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Ptchd3Q0EEE2 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Ptchd3Q0EEE2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Ptchd3Q0EEE2 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.39■□□□□ 0.37
Ptchd3Q0EEE2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ptchd3Q0EEE2 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Gm38205-201ENSMUST00000192243 258 ntBASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ptchd3Q0EEE2 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ptchd3Q0EEE2 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Ptchd3Q0EEE2 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ptchd3Q0EEE2 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ptchd3Q0EEE2 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 113.6 ms