Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.55■□□□□ 0.72
Lig3P97386 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Lig3P97386 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Lig3P97386 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Lig3P97386 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.54■□□□□ 0.72
Lig3P97386 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
Lig3P97386 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.54■□□□□ 0.72
Lig3P97386 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.54■□□□□ 0.72
Lig3P97386 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.54■□□□□ 0.72
Lig3P97386 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.54■□□□□ 0.72
Lig3P97386 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.54■□□□□ 0.72
Lig3P97386 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Lig3P97386 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig3P97386 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Lig3P97386 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Lig3P97386 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC19.53■□□□□ 0.72
Lig3P97386 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Lig3P97386 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig3P97386 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig3P97386 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig3P97386 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Lig3P97386 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.52■□□□□ 0.72
Lig3P97386 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Lig3P97386 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.52■□□□□ 0.72
Lig3P97386 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.52■□□□□ 0.72
Lig3P97386 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Lig3P97386 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Lig3P97386 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Lig3P97386 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.51■□□□□ 0.71
Lig3P97386 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Lig3P97386 Mir1199-201ENSMUST00000117015 119 ntBASIC19.51■□□□□ 0.71
Lig3P97386 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.51■□□□□ 0.71
Lig3P97386 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.51■□□□□ 0.71
Lig3P97386 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Lig3P97386 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Lig3P97386 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.51■□□□□ 0.71
Lig3P97386 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.51■□□□□ 0.71
Lig3P97386 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.51■□□□□ 0.71
Lig3P97386 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Lig3P97386 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.5■□□□□ 0.71
Lig3P97386 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.5■□□□□ 0.71
Lig3P97386 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Lig3P97386 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.5■□□□□ 0.71
Lig3P97386 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Lig3P97386 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.5■□□□□ 0.71
Lig3P97386 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Lig3P97386 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms