Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC17.21■□□□□ 0.35
Sox3P53784 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Sox3P53784 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Sox3P53784 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Sox3P53784 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC17.2■□□□□ 0.34
Sox3P53784 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.2■□□□□ 0.34
Sox3P53784 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Sox3P53784 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC17.2■□□□□ 0.34
Sox3P53784 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17.2■□□□□ 0.34
Sox3P53784 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Sox3P53784 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.19■□□□□ 0.34
Sox3P53784 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Sox3P53784 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.19■□□□□ 0.34
Sox3P53784 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Sox3P53784 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Sox3P53784 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Sox3P53784 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.19■□□□□ 0.34
Sox3P53784 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.18■□□□□ 0.34
Sox3P53784 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Sox3P53784 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.18■□□□□ 0.34
Sox3P53784 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Sox3P53784 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Sox3P53784 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Sox3P53784 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.18■□□□□ 0.34
Sox3P53784 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Sox3P53784 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Mir5122-201ENSMUST00000175004 89 ntBASIC17.17■□□□□ 0.34
Sox3P53784 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC17.17■□□□□ 0.34
Sox3P53784 Gm27741-201ENSMUST00000185060 237 ntBASIC17.17■□□□□ 0.34
Sox3P53784 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
Sox3P53784 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Sox3P53784 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.16■□□□□ 0.34
Sox3P53784 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Sox3P53784 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Sox3P53784 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Sox3P53784 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 H2-K2-201ENSMUST00000174250 1049 ntBASIC17.16■□□□□ 0.34
Sox3P53784 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Sox3P53784 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Sox3P53784 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Sox3P53784 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms