Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC16.28■□□□□ 0.2
Rfx3P48381 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
Rfx3P48381 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
Rfx3P48381 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.28■□□□□ 0.2
Rfx3P48381 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rfx3P48381 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Rfx3P48381 Gm10167-201ENSMUST00000150411 1479 ntBASIC16.28■□□□□ 0.2
Rfx3P48381 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.28■□□□□ 0.2
Rfx3P48381 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Rfx3P48381 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.28■□□□□ 0.2
Rfx3P48381 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Rfx3P48381 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC16.27■□□□□ 0.2
Rfx3P48381 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rfx3P48381 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rfx3P48381 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rfx3P48381 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rfx3P48381 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC16.27■□□□□ 0.2
Rfx3P48381 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rfx3P48381 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Rfx3P48381 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Rfx3P48381 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC16.27■□□□□ 0.2
Rfx3P48381 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC16.27■□□□□ 0.2
Rfx3P48381 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC16.27■□□□□ 0.2
Rfx3P48381 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Rfx3P48381 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Rfx3P48381 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rfx3P48381 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Rfx3P48381 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
Rfx3P48381 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC16.26■□□□□ 0.19
Rfx3P48381 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Rfx3P48381 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.26■□□□□ 0.19
Rfx3P48381 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Rfx3P48381 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Rfx3P48381 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16.25■□□□□ 0.19
Rfx3P48381 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC16.25■□□□□ 0.19
Rfx3P48381 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Rfx3P48381 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Rfx3P48381 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC16.24■□□□□ 0.19
Rfx3P48381 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Rfx3P48381 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Gm42642-201ENSMUST00000200683 355 ntBASIC16.24■□□□□ 0.19
Rfx3P48381 Gm18671-201ENSMUST00000214826 683 ntBASIC16.24■□□□□ 0.19
Rfx3P48381 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Gm5874-201ENSMUST00000096101 508 ntBASIC16.24■□□□□ 0.19
Rfx3P48381 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Rfx3P48381 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC16.24■□□□□ 0.19
Rfx3P48381 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Rfx3P48381 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.24■□□□□ 0.19
Rfx3P48381 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Rfx3P48381 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.23■□□□□ 0.19
Rfx3P48381 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Gm45906-201ENSMUST00000208911 1430 ntBASIC16.23■□□□□ 0.19
Rfx3P48381 Slc35b2-207ENSMUST00000226086 850 ntBASIC16.23■□□□□ 0.19
Rfx3P48381 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.23■□□□□ 0.19
Rfx3P48381 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
Rfx3P48381 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Rfx3P48381 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Rfx3P48381 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Rfx3P48381 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms