Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Col1a1P11087 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col1a1P11087 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col1a1P11087 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC21.17■□□□□ 0.98
Col1a1P11087 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col1a1P11087 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Col1a1P11087 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col1a1P11087 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Col1a1P11087 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col1a1P11087 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col1a1P11087 Gm5587-201ENSMUST00000206270 674 ntBASIC21.16■□□□□ 0.98
Col1a1P11087 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col1a1P11087 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col1a1P11087 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
Col1a1P11087 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col1a1P11087 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Col1a1P11087 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Col1a1P11087 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col1a1P11087 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col1a1P11087 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC21.15■□□□□ 0.98
Col1a1P11087 Gm8258-201ENSMUST00000055593 1449 ntBASIC21.15■□□□□ 0.98
Col1a1P11087 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col1a1P11087 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Col1a1P11087 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col1a1P11087 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.15■□□□□ 0.98
Col1a1P11087 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col1a1P11087 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Col1a1P11087 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col1a1P11087 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Col1a1P11087 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC21.14■□□□□ 0.98
Col1a1P11087 Gm7791-201ENSMUST00000219066 539 ntBASIC21.14■□□□□ 0.98
Col1a1P11087 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col1a1P11087 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
Col1a1P11087 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col1a1P11087 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col1a1P11087 Gm9194-201ENSMUST00000220749 1447 ntBASIC21.14■□□□□ 0.97
Col1a1P11087 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col1a1P11087 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col1a1P11087 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col1a1P11087 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col1a1P11087 Gm9013-201ENSMUST00000132939 882 ntBASIC21.13■□□□□ 0.97
Col1a1P11087 Mir1668-201ENSMUST00000184114 107 ntBASIC21.13■□□□□ 0.97
Col1a1P11087 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Gm7370-201ENSMUST00000219471 767 ntBASIC21.13■□□□□ 0.97
Col1a1P11087 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC21.13■□□□□ 0.97
Col1a1P11087 AC130713.1-201ENSMUST00000228853 1096 ntBASIC21.13■□□□□ 0.97
Col1a1P11087 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col1a1P11087 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col1a1P11087 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col1a1P11087 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Col1a1P11087 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Col1a1P11087 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Col1a1P11087 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC21.12■□□□□ 0.97
Col1a1P11087 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Col1a1P11087 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Gm21559-201ENSMUST00000220638 855 ntBASIC21.12■□□□□ 0.97
Col1a1P11087 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Gm8587-201ENSMUST00000076538 843 ntBASIC21.12■□□□□ 0.97
Col1a1P11087 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Col1a1P11087 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col1a1P11087 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Col1a1P11087 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Gm10418-201ENSMUST00000100943 576 ntBASIC21.11■□□□□ 0.97
Col1a1P11087 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC21.11■□□□□ 0.97
Col1a1P11087 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Gm27704-201ENSMUST00000185094 107 ntBASIC21.11■□□□□ 0.97
Col1a1P11087 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col1a1P11087 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col1a1P11087 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col1a1P11087 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC21.1■□□□□ 0.97
Col1a1P11087 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col1a1P11087 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col1a1P11087 Gm7638-201ENSMUST00000121348 967 ntBASIC21.1■□□□□ 0.97
Col1a1P11087 Gm27389-201ENSMUST00000183622 195 ntBASIC21.1■□□□□ 0.97
Col1a1P11087 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC21.1■□□□□ 0.97
Col1a1P11087 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col1a1P11087 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms