Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Vti1aO89116 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Vti1aO89116 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vti1aO89116 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Vti1aO89116 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vti1aO89116 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Vti1aO89116 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC19.42■□□□□ 0.7
Vti1aO89116 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vti1aO89116 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Vti1aO89116 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vti1aO89116 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vti1aO89116 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Vti1aO89116 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Vti1aO89116 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
Vti1aO89116 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Gm15565-201ENSMUST00000118890 427 ntBASIC19.41■□□□□ 0.7
Vti1aO89116 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
Vti1aO89116 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vti1aO89116 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Vti1aO89116 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Mir1199-201ENSMUST00000117015 119 ntBASIC19.4■□□□□ 0.7
Vti1aO89116 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.4■□□□□ 0.7
Vti1aO89116 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Vti1aO89116 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Gm37055-201ENSMUST00000191866 133 ntBASIC19.4■□□□□ 0.7
Vti1aO89116 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Vti1aO89116 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vti1aO89116 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.39■□□□□ 0.7
Vti1aO89116 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
Vti1aO89116 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vti1aO89116 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vti1aO89116 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vti1aO89116 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Vti1aO89116 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vti1aO89116 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.39■□□□□ 0.69
Vti1aO89116 Gm11927-201ENSMUST00000118472 759 ntBASIC19.39■□□□□ 0.69
Vti1aO89116 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.39■□□□□ 0.69
Vti1aO89116 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vti1aO89116 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vti1aO89116 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Vti1aO89116 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.39■□□□□ 0.69
Vti1aO89116 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Vti1aO89116 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vti1aO89116 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.39■□□□□ 0.69
Vti1aO89116 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vti1aO89116 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC19.38■□□□□ 0.69
Vti1aO89116 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.38■□□□□ 0.69
Vti1aO89116 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.38■□□□□ 0.69
Vti1aO89116 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Vti1aO89116 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.38■□□□□ 0.69
Vti1aO89116 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vti1aO89116 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Vti1aO89116 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Vti1aO89116 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.37■□□□□ 0.69
Vti1aO89116 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Vti1aO89116 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vti1aO89116 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.37■□□□□ 0.69
Vti1aO89116 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Vti1aO89116 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC19.37■□□□□ 0.69
Vti1aO89116 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Vti1aO89116 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vti1aO89116 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Vti1aO89116 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Vti1aO89116 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.36■□□□□ 0.69
Vti1aO89116 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Vti1aO89116 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.36■□□□□ 0.69
Vti1aO89116 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Vti1aO89116 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Vti1aO89116 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms