Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC14.96□□□□□ -0.01
Hmgb3O54879 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC14.96□□□□□ -0.01
Hmgb3O54879 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Hmgb3O54879 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Hmgb3O54879 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Hmgb3O54879 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
Hmgb3O54879 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC14.95□□□□□ -0.02
Hmgb3O54879 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Gm42501-201ENSMUST00000200220 1026 ntBASIC14.95□□□□□ -0.02
Hmgb3O54879 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC14.95□□□□□ -0.02
Hmgb3O54879 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Hmgb3O54879 Gm5828-201ENSMUST00000071842 1860 ntBASIC14.95□□□□□ -0.02
Hmgb3O54879 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC14.95□□□□□ -0.02
Hmgb3O54879 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Hmgb3O54879 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Hmgb3O54879 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Hmgb3O54879 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
Hmgb3O54879 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Hmgb3O54879 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Zcchc6-207ENSMUST00000225576 2499 ntBASIC14.93□□□□□ -0.02
Hmgb3O54879 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Hmgb3O54879 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Hmgb3O54879 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Hmgb3O54879 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC14.93□□□□□ -0.02
Hmgb3O54879 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
Hmgb3O54879 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Hmgb3O54879 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC14.92□□□□□ -0.02
Hmgb3O54879 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
Hmgb3O54879 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Hmgb3O54879 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Hmgb3O54879 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms