Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Gm12085-201ENSMUST00000119263 940 ntBASIC21.71■■□□□ 1.07
Ube4aE9Q735 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ube4aE9Q735 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ube4aE9Q735 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ube4aE9Q735 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Ube4aE9Q735 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
Ube4aE9Q735 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC21.7■■□□□ 1.06
Ube4aE9Q735 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Tgds-204ENSMUST00000228543 1594 ntBASIC21.7■■□□□ 1.06
Ube4aE9Q735 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Ube4aE9Q735 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Ube4aE9Q735 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Ube4aE9Q735 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ube4aE9Q735 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ube4aE9Q735 Gm38027-201ENSMUST00000192315 235 ntBASIC21.68■■□□□ 1.06
Ube4aE9Q735 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ube4aE9Q735 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ube4aE9Q735 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Ube4aE9Q735 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Ube4aE9Q735 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC21.68■■□□□ 1.06
Ube4aE9Q735 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ube4aE9Q735 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Gm4974-201ENSMUST00000209974 875 ntBASIC21.67■■□□□ 1.06
Ube4aE9Q735 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC21.67■■□□□ 1.06
Ube4aE9Q735 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Notumos-201ENSMUST00000151998 2659 ntBASIC21.66■■□□□ 1.06
Ube4aE9Q735 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.66■■□□□ 1.06
Ube4aE9Q735 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ube4aE9Q735 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Gm27463-201ENSMUST00000183569 57 ntBASIC21.65■■□□□ 1.06
Ube4aE9Q735 Gm9694-201ENSMUST00000193347 1189 ntBASIC21.65■■□□□ 1.06
Ube4aE9Q735 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 AC159205.6-201ENSMUST00000224935 887 ntBASIC21.65■■□□□ 1.06
Ube4aE9Q735 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ube4aE9Q735 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ube4aE9Q735 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ube4aE9Q735 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC21.64■■□□□ 1.05
Ube4aE9Q735 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ube4aE9Q735 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Ube4aE9Q735 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC21.64■■□□□ 1.05
Ube4aE9Q735 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Ube4aE9Q735 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Ube4aE9Q735 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC21.64■■□□□ 1.05
Ube4aE9Q735 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ube4aE9Q735 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ube4aE9Q735 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Ube4aE9Q735 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ube4aE9Q735 Gm10418-201ENSMUST00000100943 576 ntBASIC21.63■■□□□ 1.05
Ube4aE9Q735 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms