Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Gm10052-201ENSMUST00000168019 960 ntBASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Gm7729-201ENSMUST00000050143 801 ntBASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Col6a3E9PWQ3 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col6a3E9PWQ3 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col6a3E9PWQ3 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col6a3E9PWQ3 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Gm45328-201ENSMUST00000210942 917 ntBASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Col6a3E9PWQ3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Gm15920-201ENSMUST00000118998 402 ntBASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 AC153889.1-201ENSMUST00000219257 330 ntBASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col6a3E9PWQ3 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Wdyhv1-206ENSMUST00000227142 786 ntBASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Gm15467-201ENSMUST00000120582 445 ntBASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col6a3E9PWQ3 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Gm7213-201ENSMUST00000215977 950 ntBASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col6a3E9PWQ3 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Gm10060-201ENSMUST00000212002 111 ntBASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 AC225888.1-201ENSMUST00000227184 728 ntBASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col6a3E9PWQ3 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC18.09■□□□□ 0.49
Col6a3E9PWQ3 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Col6a3E9PWQ3 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms