Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Chd6A3KFM7 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Chd6A3KFM7 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Chd6A3KFM7 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.68□□□□□ -0.06
Chd6A3KFM7 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Gm1401-201ENSMUST00000122048 772 ntBASIC14.68□□□□□ -0.06
Chd6A3KFM7 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Chd6A3KFM7 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
Chd6A3KFM7 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Gm11355-201ENSMUST00000121120 306 ntBASIC14.66□□□□□ -0.06
Chd6A3KFM7 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.66□□□□□ -0.06
Chd6A3KFM7 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Rps4l-201ENSMUST00000071745 943 ntBASIC14.66□□□□□ -0.06
Chd6A3KFM7 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Chd6A3KFM7 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chd6A3KFM7 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC14.65□□□□□ -0.06
Chd6A3KFM7 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Chd6A3KFM7 Gm10052-201ENSMUST00000168019 960 ntBASIC14.65□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms