Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Clec4e-201ENSMUST00000032239 2518 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Grin2b-201ENSMUST00000053880 24060 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Zfp867-201ENSMUST00000057799 3412 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Hnrnpc-207ENSMUST00000227536 1301 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Kif2a-204ENSMUST00000122233 3533 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Ccdc186-201ENSMUST00000076085 2754 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm16511-201ENSMUST00000120019 564 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Nlk-ps1-201ENSMUST00000120843 1230 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm13724-201ENSMUST00000122395 1155 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm12152-201ENSMUST00000122465 684 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Speer6-ps1-201ENSMUST00000168736 545 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm42421-201ENSMUST00000172367 719 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm6803-201ENSMUST00000178301 435 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Scgb2b19-201ENSMUST00000179688 520 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm2075-201ENSMUST00000180285 435 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm8009-201ENSMUST00000191672 436 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Ighv8-3-201ENSMUST00000194985 295 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm43388-201ENSMUST00000197818 1225 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 1110003F10Rik-201ENSMUST00000199441 767 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm7832-201ENSMUST00000202613 880 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm44108-201ENSMUST00000203525 422 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm44856-201ENSMUST00000206639 304 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Klk1b12-ps-201ENSMUST00000206650 751 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm45628-201ENSMUST00000210849 274 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 AC122273.1-202ENSMUST00000213884 695 ntTSL 3 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm2022-201ENSMUST00000220585 435 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm8607-201ENSMUST00000221864 431 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm19340-201ENSMUST00000221995 345 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 AC123665.3-201ENSMUST00000228735 1216 ntBASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Nup43-201ENSMUST00000040135 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Olfr652-201ENSMUST00000098175 1061 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Aak1-202ENSMUST00000089519 19341 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Kif27-201ENSMUST00000043605 4462 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gm6710-201ENSMUST00000109011 1445 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Usp17lc-202ENSMUST00000106892 2403 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Gtdc1-203ENSMUST00000112810 2564 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Vmn1r220-205ENSMUST00000228239 7849 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Lima1Q9ERG0 Pcdh15-201ENSMUST00000064562 8830 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Dnah2-201ENSMUST00000035539 13569 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Nt5c3-202ENSMUST00000101367 1519 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Olfr259-202ENSMUST00000213978 4046 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Olfr259-204ENSMUST00000216088 4023 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Mug1-201ENSMUST00000032228 4657 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Ercc6l-201ENSMUST00000056904 5302 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Hdlbp-204ENSMUST00000186164 3808 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Platr8-201ENSMUST00000146110 1349 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Olfr1302-202ENSMUST00000214708 2461 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Matr3-215ENSMUST00000190121 2638 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Lrrtm4-206ENSMUST00000136421 4435 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Olfr537-ps1-201ENSMUST00000209871 2792 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Pole2-202ENSMUST00000221411 1641 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Atp8a2-201ENSMUST00000080368 12886 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Cntn1-201ENSMUST00000000109 5646 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Ncoa7-208ENSMUST00000215926 2875 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm23979-201ENSMUST00000104071 128 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm25785-201ENSMUST00000104129 125 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm25877-201ENSMUST00000104326 129 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Olfr20-201ENSMUST00000108465 1061 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm9836-201ENSMUST00000117132 216 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Olfr607-201ENSMUST00000119283 915 ntAPPRIS ALT2 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm5793-201ENSMUST00000119393 630 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Rps12-ps20-201ENSMUST00000121168 402 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm23884-201ENSMUST00000122687 294 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 2210411M09Rik-201ENSMUST00000128545 643 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm15932-201ENSMUST00000135068 535 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 AI662270-203ENSMUST00000145461 592 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Snrpe-204ENSMUST00000166915 503 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm17333-201ENSMUST00000169531 378 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm20475-201ENSMUST00000174884 263 ntTSL 3 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm20713-201ENSMUST00000176344 435 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm25244-201ENSMUST00000178089 132 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Rps12-ps23-201ENSMUST00000179414 402 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm27601-201ENSMUST00000184794 127 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 C78334-201ENSMUST00000186632 600 ntTSL 3 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Fcer1a-202ENSMUST00000193017 826 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 4930526M16Rik-201ENSMUST00000197305 954 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Rpl9-ps8-201ENSMUST00000198343 562 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm44020-201ENSMUST00000204618 664 ntTSL 3 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm39078-201ENSMUST00000207973 704 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm32005-201ENSMUST00000212446 959 ntTSL 5 BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Orm1-201ENSMUST00000030044 775 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Orm2-201ENSMUST00000075341 775 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 n-R5s180-201ENSMUST00000082770 106 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Vaultrc5-201ENSMUST00000083211 143 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 G530011O06Rik-201ENSMUST00000154810 2380 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm16344-201ENSMUST00000150084 1567 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 4921534H16Rik-202ENSMUST00000162911 2838 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm44901-201ENSMUST00000208157 3977 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Gm28320-201ENSMUST00000187777 2273 ntBASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Cntn3-202ENSMUST00000203619 5294 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Lima1Q9ERG0 Tsga10-201ENSMUST00000041815 3400 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Kat7-202ENSMUST00000092766 3414 ntTSL 5 BASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Gm38362-201ENSMUST00000192999 2064 ntBASIC6.03□□□□□ -1.44
Lima1Q9ERG0 E330013P04Rik-201ENSMUST00000065383 2070 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Olfr1299-202ENSMUST00000213511 1783 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Gm19093-201ENSMUST00000210671 1454 ntBASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Gm40649-201ENSMUST00000219795 1457 ntTSL 5 BASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Kcnma1-208ENSMUST00000177634 4605 ntTSL 5 BASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Cx3cr1-202ENSMUST00000177637 3156 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Lima1Q9ERG0 Cyp3a16-201ENSMUST00000031633 1730 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms