Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Gm13148-201ENSMUST00000118892 745 ntBASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trim3Q9R1R2 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trim3Q9R1R2 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 CT025689.6-201ENSMUST00000224991 1104 ntBASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trim3Q9R1R2 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim3Q9R1R2 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim3Q9R1R2 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.96■□□□□ 0.3
Trim3Q9R1R2 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Trim3Q9R1R2 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trim3Q9R1R2 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Gm6211-202ENSMUST00000167849 925 ntBASIC16.95■□□□□ 0.3
Trim3Q9R1R2 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Gm19094-201ENSMUST00000209791 1246 ntBASIC16.95■□□□□ 0.3
Trim3Q9R1R2 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trim3Q9R1R2 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Trim3Q9R1R2 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trim3Q9R1R2 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trim3Q9R1R2 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms