Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col13a1Q9R1N9 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 AC154231.1-201ENSMUST00000220564 2175 ntBASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Gm21814-202ENSMUST00000203277 873 ntBASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col13a1Q9R1N9 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col13a1Q9R1N9 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Gm11927-201ENSMUST00000118472 759 ntBASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Gm23634-201ENSMUST00000175071 91 ntBASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Gm43183-201ENSMUST00000200632 547 ntBASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Gm16042-201ENSMUST00000204813 1247 ntBASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 AC140264.2-202ENSMUST00000218746 817 ntBASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 AC107452.1-201ENSMUST00000227963 481 ntBASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col13a1Q9R1N9 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Gm14464-201ENSMUST00000119658 1254 ntBASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 AC156016.1-201ENSMUST00000227190 1035 ntBASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Col13a1Q9R1N9 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Gm38342-201ENSMUST00000195710 2980 ntBASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col13a1Q9R1N9 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col13a1Q9R1N9 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col13a1Q9R1N9 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC15.27■□□□□ 0.03
Col13a1Q9R1N9 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col13a1Q9R1N9 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col13a1Q9R1N9 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 63.3 ms