Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim54Q9ERP3 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Gm9987-201ENSMUST00000069768 567 ntBASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.53■□□□□ 0.72
Trim54Q9ERP3 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Gm37292-201ENSMUST00000192062 758 ntBASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim54Q9ERP3 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC19.52■□□□□ 0.71
Trim54Q9ERP3 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim54Q9ERP3 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim54Q9ERP3 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim54Q9ERP3 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim54Q9ERP3 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Trim54Q9ERP3 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Trim54Q9ERP3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Gm43799-201ENSMUST00000201845 579 ntBASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim54Q9ERP3 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms