Protein–RNA interactions for Protein: Q99PJ2

Trim8, Probable E3 ubiquitin-protein ligase TRIM8, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim8Q99PJ2 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim8Q99PJ2 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim8Q99PJ2 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim8Q99PJ2 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim8Q99PJ2 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim8Q99PJ2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Trim8Q99PJ2 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trim8Q99PJ2 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim8Q99PJ2 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms